The Basic Biology of Aging at the University of Washington
Matt Kaeberlein

Email:kaeber@u.washington.edu


The initial goal of Dr. Kaeberlein’s project was to determine the feasibility of genome-wide chronologic and replicative life span analysis using the approximately 4800 strains in Saccharomyces cerevisiae Genome Deletion Project ORF deletion collection. In order to accomplish this, he has performed replicative and chronologic aging assay on approximately 50 strains, all of which have been reported to affect either RLS or CLS in a shorter-lived strain background. By collecting this data set, Dr. Kaeberlein have been able to (1) optimize the chronologic aging assay for genome-wide analysis, (2) perform statistical analysis of replicative life span data to determine the minimal number of cells of a given strain needed to identify long-lived mutants, (3) compare the correlation between chronological and replicative life span across a large number of strains, and (4) uncover novel biological insights into the aging process in yeast. We are currently carrying out a genome-wide quantitative analysis of chronological life span and have begun a genome-wide quantitative analysis of replicative life span, with approximately 2% of the genome completed.

One particularly interesting result to come from the preliminary analysis is that in a long-lived fob1 background, calorie restriction extends replicative life span even in cells lacking the Sir2 histone deacetylase. We have developed a molecular model to explain this observation and are carrying out further experiments to identify the factors responsible for calorie restriction-mediated replicative life span extension in yeast.